My Bibliography

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Eeftinck Schattenkerk LD, Musters GD, Coultre SEL, de Jonge WJ, van Heurn LE, Derikx JP. Incisional hernia after abdominal surgery in infants: A retrospective analysis of incidence and risk factors. J Pediatr Surg. 2021 Nov;56(11):2107-2112. doi: 10.1016/j.jpedsurg.2021.01.037. Epub 2021 Feb 10. PubMed PMID: 33618851.

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de Krijger M, Wildenberg ME, Mookhoek A, Verheul S, de Jonge WJ, Ponsioen CY. Expression of MAdCAM-1 and Gut-homing T Cells in Inflamed Pouch Mucosa. J Crohns Colitis. 2021 Sep 25;15(9):1491-1499. doi: 10.1093/ecco-jcc/jjab041. PubMed PMID: 33675360.

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Ponsioen CY, de Jonge WJ. Feeding the Gut-Liver Axis in PSC: What Makes It Different from IBD?. Gastroenterology. 2021 Sep;161(3):1070-1071. doi: 10.1053/j.gastro.2021.05.028. Epub 2021 May 18. PubMed PMID: 34015335.

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Eeftinck Schattenkerk LD, Musters GD, Nijssen DJ, de Jonge WJ, de Vries R, van Heurn LWE, Derikx JPM. The incidence of abdominal surgical site infections after abdominal birth defects surgery in infants: A systematic review with meta-analysis. J Pediatr Surg. 2021 Sep;56(9):1547-1554. doi: 10.1016/j.jpedsurg.2021.01.018. Epub 2021 Jan 17. Review. PubMed PMID: 33485614.

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Verburgt CM, Heutink WP, Kuilboer LIM, Dickmann JD, van Etten-Jamaludin FS, Benninga MA, de Jonge WJ, Van Limbergen JE, Tabbers MM. Antibiotics in pediatric inflammatory bowel diseases: a systematic review. Expert Rev Gastroenterol Hepatol. 2021 Aug;15(8):891-908. doi: 10.1080/17474124.2021.1940956. Epub 2021 Jul 6. PubMed PMID: 34148466.

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Ghiboub M, Elfiky AMI, de Winther MPJ, Harker NR, Tough DF, de Jonge WJ. Selective Targeting of Epigenetic Readers and Histone Deacetylases in Autoimmune and Inflammatory Diseases: Recent Advances and Future Perspectives. J Pers Med. 2021 Apr 23;11(5). doi: 10.3390/jpm11050336. Review. PubMed PMID: 33922725; PubMed Central PMCID: PMC8145108.

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Li Yim AYF, Ferrero E, Maratou K, Lewis HD, Royal G, Tough DF, Larminie C, Mannens MMAM, Henneman P, de Jonge WJ, van de Sande MGH, Gerlag DM, Prinjha RK, Tak PP. Novel Insights Into Rheumatoid Arthritis Through Characterization of Concordant Changes in DNA Methylation and Gene Expression in Synovial Biopsies of Patients With Differing Numbers of Swollen Joints. Front Immunol. 2021;12:651475. doi: 10.3389/fimmu.2021.651475. eCollection 2021. PubMed PMID: 33968050; PubMed Central PMCID: PMC8100206.

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Rahman S, Davids M, van Hamersveld PHP, Welting O, Rahaoui H, Schuren F, Meijer SL, van den Wijngaard RM, Hakvoort TBM, de Jonge WJ, Heinsbroek SEM. Dietary Curdlan Enhances Bifidobacteria and Reduces Intestinal Inflammation in Mice. Nutrients. 2021 Apr 15;13(4). doi: 10.3390/nu13041305. PubMed PMID: 33920960; PubMed Central PMCID: PMC8071228.

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De Vries LCS, Ghiboub M, van Hamersveld PHP, Welting O, Verseijden C, Bell MJ, Rioja I, Prinjha RK, Koelink PJ, Strobl B, Müller M, D'Haens GR, Wildenberg ME, De Jonge WJ. Tyrosine Kinase 2 Signalling Drives Pathogenic T cells in Colitis. J Crohns Colitis. 2021 Apr 6;15(4):617-630. doi: 10.1093/ecco-jcc/jjaa199. PubMed PMID: 33005945; PubMed Central PMCID: PMC8023831.

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Haak BW, Argelaguet R, Kinsella CM, Kullberg RFJ, Lankelma JM, Deijs M, Klein M, Jebbink MF, Hugenholtz F, Kostidis S, Giera M, Hakvoort TBM, de Jonge WJ, Schultz MJ, van Gool T, van der Poll T, de Vos WM, van der Hoek LM, Wiersinga WJ. Integrative Transkingdom Analysis of the Gut Microbiome in Antibiotic Perturbation and Critical Illness. mSystems. 2021 Mar 16;6(2). doi: 10.1128/mSystems.01148-20. PubMed PMID: 33727397; PubMed Central PMCID: PMC8546997.

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Metselaar PI, Hos C, Welting O, Bosch JA, Kraneveld AD, de Jonge WJ, Te Velde AA. Ambiguity about Splicing Factor 3b Subunit 3 (SF3B3) and Sin3A Associated Protein 130 (SAP130). Cells. 2021 Mar 8;10(3). doi: 10.3390/cells10030590. PubMed PMID: 33800128; PubMed Central PMCID: PMC7999425.

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Brinkman DJ, Troquay S, de Jonge WJ, Irwin ED, Vervoordeldonk MJ, Luyer MDP, Nederend J. Morphometric analysis of the splenic artery using contrast-enhanced computed tomography (CT). Surg Radiol Anat. 2021 Mar;43(3):377-384. doi: 10.1007/s00276-020-02598-1. Epub 2020 Oct 26. PubMed PMID: 33104863; PubMed Central PMCID: PMC7897610.

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Ten Hove AS, Seppen J, de Jonge WJ. Neuronal innervation of the intestinal crypt. Am J Physiol Gastrointest Liver Physiol. 2021 Feb 1;320(2):G193-G205. doi: 10.1152/ajpgi.00239.2020. Epub 2020 Dec 9. Review. PubMed PMID: 33296267.

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Verburgt CM, Ghiboub M, Benninga MA, de Jonge WJ, Van Limbergen JE. Nutritional Therapy Strategies in Pediatric Crohn's Disease. Nutrients. 2021 Jan 13;13(1). doi: 10.3390/nu13010212. Review. PubMed PMID: 33450982; PubMed Central PMCID: PMC7828385.

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Eeftinck Schattenkerk LD, Musters GD, Nijssen DJ, de Jonge WJ, de Vries R, van Heurn LWE, Derikx JP. Incisional hernia after surgical correction of abdominal congenital anomalies in infants: a systematic review with meta-analysis. Sci Rep. 2020 Dec 3;10(1):21170. doi: 10.1038/s41598-020-77976-1. PubMed PMID: 33273483; PubMed Central PMCID: PMC7713071.

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Diederen K, Li JV, Donachie GE, de Meij TG, de Waart DR, Hakvoort TBM, Kindermann A, Wagner J, Auyeung V, Te Velde AA, Heinsbroek SEM, Benninga MA, Kinross J, Walker AW, de Jonge WJ, Seppen J. Exclusive enteral nutrition mediates gut microbial and metabolic changes that are associated with remission in children with Crohn's disease. Sci Rep. 2020 Nov 3;10(1):18879. doi: 10.1038/s41598-020-75306-z. PubMed PMID: 33144591; PubMed Central PMCID: PMC7609694.

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Ten Hove AS, Brinkman DJ, Li Yim AYF, Verseijden C, Hakvoort TBM, Admiraal I, Welting O, van Hamersveld PHP, Sinniger V, Bonaz B, Luyer MD, de Jonge WJ. The role of nicotinic receptors in SARS-CoV-2 receptor ACE2 expression in intestinal epithelia. Bioelectron Med. 2020;6:20. doi: 10.1186/s42234-020-00057-1. eCollection 2020. PubMed PMID: 33123616; PubMed Central PMCID: PMC7592135.

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Slooter MD, Talboom K, Sharabiany S, van Helsdingen CPM, van Dieren S, Ponsioen CY, Nio CY, Consten ECJ, Wijsman JH, Boermeester MA, Derikx JPM, Musters GD, Bemelman WA, Tanis PJ, Hompes R. IMARI: multi-Interventional program for prevention and early Management of Anastomotic leakage after low anterior resection in Rectal cancer patIents: rationale and study protocol. BMC Surg. 2020 Oct 15;20(1):240. doi: 10.1186/s12893-020-00890-w. PubMed PMID: 33059647; PubMed Central PMCID: PMC7565357.

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Ghiboub M, Zhao J, Li Yim AYF, Schilderink R, Verseijden C, van Hamersveld PHP, Duarte JM, Hakvoort TBM, Admiraal I, Harker NR, Tough DF, Henneman P, de Winther MPJ, de Jonge WJ. HDAC3 Mediates the Inflammatory Response and LPS Tolerance in Human Monocytes and Macrophages. Front Immunol. 2020;11:550769. doi: 10.3389/fimmu.2020.550769. eCollection 2020. PubMed PMID: 33123128; PubMed Central PMCID: PMC7573361.

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de Jonge WJ, Brok M, Lijnzaad P, Kemmeren P, Holstege FC. Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function. Mol Syst Biol. 2020 Oct;16(10):e9885. doi: 10.15252/msb.20209885. PubMed PMID: 33280256; PubMed Central PMCID: PMC7586999.

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Li Z, de Jonge WJ, Wang Y, Rensen PCN, Kooijman S. Electrical Neurostimulation Promotes Brown Adipose Tissue Thermogenesis. Front Endocrinol (Lausanne). 2020;11:567545. doi: 10.3389/fendo.2020.567545. eCollection 2020. PubMed PMID: 33101199; PubMed Central PMCID: PMC7555256.

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Ghiboub M, Verburgt CM, Sovran B, Benninga MA, de Jonge WJ, Van Limbergen JE. Nutritional Therapy to Modulate Tryptophan Metabolism and Aryl Hydrocarbon-Receptor Signaling Activation in Human Diseases. Nutrients. 2020 Sep 17;12(9). doi: 10.3390/nu12092846. Review. PubMed PMID: 32957545; PubMed Central PMCID: PMC7551725.

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Peters EG, Pattamatta M, Smeets BJJ, Brinkman DJ, Evers SMAA, de Jonge WJ, Hiligsmann M, Luyer MDP. The clinical and economical impact of postoperative ileus in patients undergoing colorectal surgery. Neurogastroenterol Motil. 2020 Aug;32(8):e13862. doi: 10.1111/nmo.13862. Epub 2020 May 13. PubMed PMID: 32400934.

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van Helsdingen CP, Jongen AC, de Jonge WJ, Bouvy ND, Derikx JP. Consensus on the definition of colorectal anastomotic leakage: A modified Delphi study. World J Gastroenterol. 2020 Jun 21;26(23):3293-3303. doi: 10.3748/wjg.v26.i23.3293. PubMed PMID: 32684743; PubMed Central PMCID: PMC7336323.

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de Jonge WJ, Brok M, Kemmeren P, Holstege FCP. An Optimized Chromatin Immunoprecipitation Protocol for Quantification of Protein-DNA Interactions. STAR Protoc. 2020 Jun 19;1(1):100020. doi: 10.1016/j.xpro.2020.100020. PubMed PMID: 32685929; PubMed Central PMCID: PMC7357673.

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van Thiel IAM, de Jonge WJ, Chiu IM, van den Wijngaard RM. Microbiota-neuroimmune cross talk in stress-induced visceral hypersensitivity of the bowel. Am J Physiol Gastrointest Liver Physiol. 2020 Jun 1;318(6):G1034-G1041. doi: 10.1152/ajpgi.00196.2019. Epub 2020 Apr 20. PubMed PMID: 32308040; PubMed Central PMCID: PMC7642838.

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Deianova N, El Manouni El Hassani S, Niemarkt HJ, Cossey V, van Kaam AH, Jenken F, van Weissenbruch MM, Doedes EM, Baelde K, Menezes R, Benninga MA, de Jonge WJ, de Boer NK, de Meij TG. Fecal Volatile Organic Compound Profiles are Not Influenced by Gestational Age and Mode of Delivery: A Longitudinal Multicenter Cohort Study. Biosensors (Basel). 2020 May 11;10(5). doi: 10.3390/bios10050050. PubMed PMID: 32403393; PubMed Central PMCID: PMC7277672.

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de Krijger M, Visseren T, Wildenberg ME, Hooijer GKJ, Verstegen MMA, van der Laan LJW, de Jonge WJ, Verheij J, Ponsioen CY. Characterization of gut-homing molecules in non-endstage livers of patients with primary sclerosing cholangitis and inflammatory bowel disease. J Transl Autoimmun. 2020;3:100054. doi: 10.1016/j.jtauto.2020.100054. eCollection 2020. PubMed PMID: 32743534; PubMed Central PMCID: PMC7388383.

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Li Yim AYF, Duijvis NW, Ghiboub M, Sharp C, Ferrero E, Mannens MMAM, D'Haens GR, de Jonge WJ, Te Velde AA, Henneman P. Whole-Genome DNA Methylation Profiling of CD14+ Monocytes Reveals Disease Status and Activity Differences in Crohn's Disease Patients. J Clin Med. 2020 Apr 8;9(4). doi: 10.3390/jcm9041055. PubMed PMID: 32276386; PubMed Central PMCID: PMC7230341.

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Erkelens MN, Goverse G, Konijn T, Molenaar R, Beijer MR, Van den Bossche J, de Goede KE, Verberk SGS, de Jonge WJ, den Haan JMM, Mebius RE. Intestinal Macrophages Balance Inflammatory Expression Profiles via Vitamin A and Dectin-1-Mediated Signaling. Front Immunol. 2020;11:551. doi: 10.3389/fimmu.2020.00551. eCollection 2020. PubMed PMID: 32296441; PubMed Central PMCID: PMC7138104.

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van Thiel IAM, Botschuijver S, de Jonge WJ, Seppen J. Painful interactions: Microbial compounds and visceral pain. Biochim Biophys Acta Mol Basis Dis. 2020 Jan 1;1866(1):165534. doi: 10.1016/j.bbadis.2019.165534. Epub 2019 Oct 18. Review. PubMed PMID: 31634534.

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Chen HJ, Li Yim AYF, Griffith GR, de Jonge WJ, Mannens MMAM, Ferrero E, Henneman P, de Winther MPJ. Meta-Analysis of in vitro-Differentiated Macrophages Identifies Transcriptomic Signatures That Classify Disease Macrophages in vivo. Front Immunol. 2019;10:2887. doi: 10.3389/fimmu.2019.02887. eCollection 2019. PubMed PMID: 31921150; PubMed Central PMCID: PMC6917623.

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Willemze RA, Brinkman DJ, Welting O, van Hamersveld PHP, Verseijden C, Luyer MD, Wildenberg ME, Seppen J, de Jonge WJ. Acetylcholine-producing T cells augment innate immune-driven colitis but are redundant in T cell-driven colitis. Am J Physiol Gastrointest Liver Physiol. 2019 Nov 1;317(5):G557-G568. doi: 10.1152/ajpgi.00067.2019. Epub 2019 Jul 19. PubMed PMID: 31322912.

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Luque-Martin R, Van den Bossche J, Furze RC, Neele AE, van der Velden S, Gijbels MJJ, van Roomen CPPA, Bernard SG, de Jonge WJ, Rioja I, Prinjha RK, Lewis HD, Mander PK, de Winther MPJ. Targeting Histone Deacetylases in Myeloid Cells Inhibits Their Maturation and Inflammatory Function With Limited Effects on Atherosclerosis. Front Pharmacol. 2019;10:1242. doi: 10.3389/fphar.2019.01242. eCollection 2019. PubMed PMID: 31736752; PubMed Central PMCID: PMC6830127.

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de Krijger M, Wildenberg ME, de Jonge WJ, Ponsioen CY. Return to sender: Lymphocyte trafficking mechanisms as contributors to primary sclerosing cholangitis. J Hepatol. 2019 Sep;71(3):603-615. doi: 10.1016/j.jhep.2019.05.006. Epub 2019 May 18. Review. PubMed PMID: 31108158.

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Botschuijver S, van Diest SA, van Thiel IAM, Saia RS, Strik AS, Yu Z, Maria-Ferreira D, Welting O, Keszthelyi D, Jennings G, Heinsbroek SEM, Elferink RPO, Schuren FHJ, de Jonge WJ, van den Wijngaard RM. Miltefosine treatment reduces visceral hypersensitivity in a rat model for irritable bowel syndrome via multiple mechanisms. Sci Rep. 2019 Aug 29;9(1):12530. doi: 10.1038/s41598-019-49096-y. PubMed PMID: 31467355; PubMed Central PMCID: PMC6715706.

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Brinkman DJ, Ten Hove AS, Vervoordeldonk MJ, Luyer MD, de Jonge WJ. Neuroimmune Interactions in the Gut and Their Significance for Intestinal Immunity. Cells. 2019 Jul 2;8(7). doi: 10.3390/cells8070670. Review. PubMed PMID: 31269754; PubMed Central PMCID: PMC6679154.

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De Vries LCS, Duarte JM, De Krijger M, Welting O, Van Hamersveld PHP, Van Leeuwen-Hilbers FWM, Moerland PD, Jongejan A, D'Haens GR, De Jonge WJ, Wildenberg ME. A JAK1 Selective Kinase Inhibitor and Tofacitinib Affect Macrophage Activation and Function. Inflamm Bowel Dis. 2019 Mar 14;25(4):647-660. doi: 10.1093/ibd/izy364. PubMed PMID: 30668755.

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Hong GS, Zillekens A, Schneiker B, Pantelis D, de Jonge WJ, Schaefer N, Kalff JC, Wehner S. Non-invasive transcutaneous auricular vagus nerve stimulation prevents postoperative ileus and endotoxemia in mice. Neurogastroenterol Motil. 2019 Mar;31(3):e13501. doi: 10.1111/nmo.13501. Epub 2018 Nov 8. PubMed PMID: 30406957.

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Willemze RA, Welting O, van Hamersveld P, Verseijden C, Nijhuis LE, Hilbers FW, Meijer SL, Heesters BA, Folgering JHA, Darwinkel H, Blancou P, Vervoordeldonk MJ, Seppen J, Heinsbroek SEM, de Jonge WJ. Loss of intestinal sympathetic innervation elicits an innate immune driven colitis. Mol Med. 2019 Jan 7;25(1):1. doi: 10.1186/s10020-018-0068-8. PubMed PMID: 30616543; PubMed Central PMCID: PMC6322236.

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Li Yim AYF, de Bruyn JR, Duijvis NW, Sharp C, Ferrero E, de Jonge WJ, Wildenberg ME, Mannens MMAM, Buskens CJ, D'Haens GR, Henneman P, Te Velde AA. A distinct epigenetic profile distinguishes stenotic from non-inflamed fibroblasts in the ileal mucosa of Crohn's disease patients. PLoS One. 2018;13(12):e0209656. doi: 10.1371/journal.pone.0209656. eCollection 2018. PubMed PMID: 30589872; PubMed Central PMCID: PMC6307755.

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Fornai M, van den Wijngaard RM, Antonioli L, Pellegrini C, Blandizzi C, de Jonge WJ. Neuronal regulation of intestinal immune functions in health and disease. Neurogastroenterol Motil. 2018 Dec;30(12):e13406. doi: 10.1111/nmo.13406. Epub 2018 Jul 29. Review. PubMed PMID: 30058092.

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Smeets BJJ, Peters EG, Horsten ECJ, Weijs TJ, Rutten HJT, Buurman WA, de Jonge WJ, Luyer MDP. Effect of Early vs Late Start of Oral Intake on Anastomotic Leakage Following Elective Lower Intestinal Surgery: A Systematic Review. Nutr Clin Pract. 2018 Dec;33(6):803-812. doi: 10.1177/0884533617711128. Epub 2017 Dec 14. PubMed PMID: 28628353.

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Botschuijver S, Welting O, Levin E, Maria-Ferreira D, Koch E, Montijn RC, Seppen J, Hakvoort TBM, Schuren FHJ, de Jonge WJ, van den Wijngaard RM. Reversal of visceral hypersensitivity in rat by Menthacarin(®) , a proprietary combination of essential oils from peppermint and caraway, coincides with mycobiome modulation. Neurogastroenterol Motil. 2018 Jun;30(6):e13299. doi: 10.1111/nmo.13299. Epub 2018 Jan 31. PubMed PMID: 29383802.

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Smeets BJJ, Brinkman DJ, Horsten ECJ, Langius JAE, Rutten HJT, de Jonge WJ, Luyer MDP. The Effect of Myopenia on the Inflammatory Response Early after Colorectal Surgery. Nutr Cancer. 2018 Apr;70(3):460-466. doi: 10.1080/01635581.2018.1445763. Epub 2018 Mar 14. PubMed PMID: 29537903.

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Peters EG, Smeets BJJ, Nors J, Back CM, Funder JA, Sommer T, Laurberg S, Løve US, Leclercq WKG, Slooter GD, de Vries Reilingh TS, Wegdam JA, Nieuwenhuijzen GAP, Hiligsmann M, Buise MP, Buurman WA, de Jonge WJ, Rutten HJT, Luyer MDP. Perioperative lipid-enriched enteral nutrition versus standard care in patients undergoing elective colorectal surgery (SANICS II): a multicentre, double-blind, randomised controlled trial. Lancet Gastroenterol Hepatol. 2018 Apr;3(4):242-251. doi: 10.1016/S2468-1253(18)30031-1. Epub 2018 Feb 14. PubMed PMID: 29426699.

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Willemze RA, Welting O, van Hamersveld HP, Meijer SL, Folgering JHA, Darwinkel H, Witherington J, Sridhar A, Vervoordeldonk MJ, Seppen J, de Jonge WJ. Neuronal control of experimental colitis occurs via sympathetic intestinal innervation. Neurogastroenterol Motil. 2018 Mar;30(3). doi: 10.1111/nmo.13163. Epub 2017 Jul 26. PubMed PMID: 28745812.

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Willemze RA, Bakker T, Pippias M, Ponsioen CY, de Jonge WJ. β-Blocker use is associated with a higher relapse risk of inflammatory bowel disease: a Dutch retrospective case-control study. Eur J Gastroenterol Hepatol. 2018 Feb;30(2):161-166. doi: 10.1097/MEG.0000000000001016. PubMed PMID: 29111997.

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Duijvis NW, Moerland PD, Kunne C, Slaman MMW, van Dooren FH, Vogels EW, de Jonge WJ, Meijer SL, Fluiter K, Te Velde AA. Inhibition of miR-142-5P ameliorates disease in mouse models of experimental colitis. PLoS One. 2017;12(10):e0185097. doi: 10.1371/journal.pone.0185097. eCollection 2017. PubMed PMID: 29059189; PubMed Central PMCID: PMC5653202.

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Botschuijver S, Roeselers G, Levin E, Jonkers DM, Welting O, Heinsbroek SEM, de Weerd HH, Boekhout T, Fornai M, Masclee AA, Schuren FHJ, de Jonge WJ, Seppen J, van den Wijngaard RM. Intestinal Fungal Dysbiosis Is Associated With Visceral Hypersensitivity in Patients With Irritable Bowel Syndrome and Rats. Gastroenterology. 2017 Oct;153(4):1026-1039. doi: 10.1053/j.gastro.2017.06.004. Epub 2017 Jun 15. PubMed PMID: 28624575.